University of Connecticut University of UC Title Fallback Connecticut

Publications

Google Scholar Citations Link

Journals

9. Yong-Jun Shin (2016),Digital Endocrinology”, under review.

8. Yong-Jun Shin (2016), “Digital Signal Processing and Control for the Study of Gene Networks“, Scientific Reports 6:24733.

7.  Pengcheng Bu, Kai-Yuan Chen, Joyce Huan Chen, Lihua Wang, Jewell Walters, YongJun Shin, Julian P. Goerger, Jian Sun, Mavee Witherspoon, Nikolai Rakhilin, Jiahe Li, Herman Yang, Jeff Milsom, Sang Lee, Warren Zipfel, Moonsoo M. Jin, Zeynep H. GuSteven M. Lipkin, and Xiling Shen (2013). “A microRNA miR-34a Regulated Bimodal Switch targets Notch in Colon Cancer Stem Cells“, Cell Stem Cell, 12, 602-615.

6.  Yong-Jun ShinAli H. Sayed, Brandon Hencey, Steven M. Lipkin, Xiling Shen (2013), “Post-translational regulation enables robust p53 regulation“, BMC System Biology, 7:83.

5.  Yong-Jun Shin, Ali H. Sayed, Xiling Shen (2012), Adaptive Models for Gene Networks, PLoS ONE 7(2): e31657.

4.  Yong-Jun Shin, Brandon Hencey, Steven M. Lipkin, Xiling Shen (2011), “Frequency Domain Analysis Reveals External Periodic Fluctuations Can Generate Sustained p53 Oscillation, PLoS ONE 6(7): e22852.

3.  Yong-Jun Shin, Leonidas Bleris (2010), Linear Control Theory for Gene Network Modeling, PLoS ONE 5(9): e12785.

2.  Yong-Jun Shin, Mehrdad Nourani (2010), Statecharts for Gene Network Modeling, PLoS ONE 5(2): e9376.

1.  Yong-Jun Shin, Jeong-Bong Lee (2010), Machine Vision for Digital Microfluidics, American Institute of Physics (API) Review of Scientific Instruments, 81:014302 (selected for the February 1, 2010 issue of Virtual Journal of Biological Physics Research as one of the Top 20 most downloaded articles in Feb. 2010).

 

Conferences

14. Yong-Jun Shin and Bahareh Mahrou (2014), “Modeling Collective & Intelligent Decision Making of Multi-cellular Populations,” Proceedings of the International Conference of the Institute of Electrical and Electronics Engineers (IEEE) Engineering in Medicine and Biology Society (EMBC), Chicago, IL, Aug 2014, pp. 334-337.

13. Yong-Jun Shin (2013), “Parallel Computing for Adaptive Multi-Cellular Gene Network Modeling, Proceedings of the Institute of Electrical and Electronics Engineers (IEEE) Global Conference on Signal and Information Processing, Austin, TX, Dec 2013, pp. 103-104.

12. Yong-Jun Shin, Ali H. Sayed, Xiling Shen (2012), “Using an Adaptive Gene Network Model for Self-Organizing Multicellular Behavior“, Proceedings of the International Conference of the Institute of Electrical and Electronics Engineers (IEEE) Engineering in Medicine and Biology Society (EMBC), San Diego, CA,  Aug 2012, pp. 5449-5453.

11.  Yong-Jun Shin, Ali H. Sayed, Brandon Hencey, Xiling Shen (2012), Feedback Control Theory Reveals Tradeoff between Robustness and Stability in the p53-MDM2 Network, 2012 q-bio Conference, Santa Fe, NM, August 2012.

10.  Yong-Jun Shin, Ali H. Sayed, Xiling Shen (2012), Discrete-Time Analysis For Gene Network Modeling, The Fourth International Workshop on Bio-Design Automation (IWBDA) at DAC (Design Automation Conference), San Francisco, CA, June 2012.

9. Yong-Jun Shin, Brandon Hencey, Steven M. Lipkin, Xiling Shen (2011), “Disturbance Rejection Helps Modulate the p53 Oscillation, Proceedings of the 4th American Society of Mechanical Engineers (ASME) Annual Dynamic Systems and Control Conference, Arlington, Virginia,  pp. 557-563.

8.  Yong-Jun ShinXiling Shen (2011), “Validation of Gene Network Models with Noisy Experimental Measurements Using the Kalman Filter, The Third International Workshop on Bio-Design Automation (IWBDA) at DAC (Design Automation Conference), San Diego, CA, June 2011.

7.  Pengcheng Bu, Yong-Jun Shin, Xiling Shen (2011), “A Coherent Feedforward Loop Robustly Regulating Asymmetric Cell Fate in Colon Stem Cells, The Third International Workshop on Bio-Design Automation (IWBDA) at DAC (Design Automation Conference), San Diego, CA, June 2011.

6.  Yong-Jun ShinXiling Shen (2011), “A Novel Way of Generating a Sustained Oscillation Using a Negative Feedback Gene Circuit, The Fifth International Meeting on Synthetic Biology (SB5.0), Stanford, CA, June 2011.

5.  Yong-Jun Shin, Mehrdad Nourani, Leonidas Bleris (2010),   “Novel Statechart and Control Theory-based Approaches for Gene Network Modeling”2010 American Institute of Chemical Engineers (AIChE) Annual Meeting, Salt Lake City, UT, Nov 2010.

4.  Yong-Jun ShinLeonidas Bleris (2010), “Modeling Complex Gene Networks Using Engineering Principles”The Society for Design and Process Science (SDPS) 2010, Dallas, TX, June 2010.

3.  Yong-Jun ShinMehrdad Nourani, Rockford Draper, Jeong-Bong Lee (2009), “Using a Finite State Machine for Gene Transcription Network Modeling”The International Conference on Bioinformatics and Computational Biology (BICoB2009, New Orleans, LA, April 2009.

2.  Yong-Jun ShinJeong-Bong Lee (2008), “Digital Microfluidics as a Novel Platform for Systems Biology”The 9th International Conference on Systems Biology (ICSB), Gothenburg, Sweden, August 2008

1.  Yong-Jun Shin, Jeong-Bong Lee (2008), Digital Microfluidics-based High-Throughput Imaging for Systems Biology, Proceedings of the Institute of Electrical and Electronics Engineers (IEEE) Sensors Conference, Lecce, Italy, Aug 2008, pp. 1202 – 1205.

 

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